Functional genomic data analysis: transcriptomics

• 1. Practical content
• 2. Connect to the IFB server
• 3. Connect to the IFB Rstudio server

Practical Transcriptomic analysis

TD Microarrays

TD RNAseq

Connect to the IFB server

For this part of the practical, you will work remotely on the IFB-core cluster located in Orsay (IDRIS). Because it it a shared infrastructure you will have to pay attention to the command you use to start a job. They all must start with srun.
You can refer to IFB Core Cluster Documentation for more detail about logging, data management, job submission.

Sign in on the server

• On Windows using MobaXterm

1. In Session > SSH
   • Remote Host : core.cluster.france-bioinformatique.fr
   • Specify username : ticked and filled in your login
   • Advanced SSH settings : tick X11-Forwarding
2. Enter your password
3. You should be logged on the IFB Core cluster

• On MacOS and Linux using a terminal window

  ssh <login>@core.cluster.france-bioinformatique.fr
  

Connect to the IFB Rstudio server

In a web browser, connect to https://rstudio.cluster.france-bioinformatique.fr/auth-sign-in and log in using your user name and password (same as for ssh connection)

You will reached the familiar Rstudio environment: